Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hoxd3P09027 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Gm29518-201ENSMUST00000190858 372 ntBASIC12.99□□□□□ -0.33
Hoxd3P09027 Gm17808-201ENSMUST00000200859 894 ntBASIC12.99□□□□□ -0.33
Hoxd3P09027 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Fcho2-208ENSMUST00000224992 2964 ntBASIC12.99□□□□□ -0.33
Hoxd3P09027 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC12.99□□□□□ -0.33
Hoxd3P09027 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC12.99□□□□□ -0.33
Hoxd3P09027 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Hoxd3P09027 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Zcchc6-207ENSMUST00000225576 2499 ntBASIC12.98□□□□□ -0.33
Hoxd3P09027 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 AC121598.2-201ENSMUST00000228376 2325 ntBASIC12.98□□□□□ -0.33
Hoxd3P09027 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Gm10819-201ENSMUST00000099988 561 ntBASIC12.98□□□□□ -0.33
Hoxd3P09027 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Gm43548-201ENSMUST00000197139 2353 ntBASIC12.98□□□□□ -0.33
Hoxd3P09027 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC12.98□□□□□ -0.33
Hoxd3P09027 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Hoxd3P09027 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC12.97□□□□□ -0.33
Hoxd3P09027 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Hoxd3P09027 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Hoxd3P09027 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC12.97□□□□□ -0.33
Hoxd3P09027 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Hoxd3P09027 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Hoxd3P09027 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 10.6 ms