Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.15■□□□□ 0.02
Lmx1bO88609 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Lmx1bO88609 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC15.15■□□□□ 0.02
Lmx1bO88609 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Lmx1bO88609 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Lmx1bO88609 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Lmx1bO88609 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.02
Lmx1bO88609 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Lmx1bO88609 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC15.14■□□□□ 0.01
Lmx1bO88609 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Lmx1bO88609 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.14■□□□□ 0.01
Lmx1bO88609 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Lmx1bO88609 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Lmx1bO88609 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC15.14■□□□□ 0.01
Lmx1bO88609 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Lmx1bO88609 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Lmx1bO88609 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Lmx1bO88609 Gm9103-201ENSMUST00000119371 405 ntBASIC15.13■□□□□ 0.01
Lmx1bO88609 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Lmx1bO88609 Gm27000-201ENSMUST00000182943 842 ntBASIC15.13■□□□□ 0.01
Lmx1bO88609 Gm37722-201ENSMUST00000193757 208 ntBASIC15.13■□□□□ 0.01
Lmx1bO88609 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC15.13■□□□□ 0.01
Lmx1bO88609 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
Lmx1bO88609 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Lmx1bO88609 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Lmx1bO88609 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
Lmx1bO88609 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Lmx1bO88609 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Lmx1bO88609 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Lmx1bO88609 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.12■□□□□ 0.01
Lmx1bO88609 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Lmx1bO88609 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Lmx1bO88609 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Lmx1bO88609 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lmx1bO88609 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Lmx1bO88609 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lmx1bO88609 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Lmx1bO88609 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Lmx1bO88609 Mir770-201ENSMUST00000103252 94 ntBASIC15.11■□□□□ 0.01
Lmx1bO88609 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
Lmx1bO88609 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC15.11■□□□□ 0.01
Lmx1bO88609 Gm11860-201ENSMUST00000122346 1010 ntBASIC15.11■□□□□ 0.01
Lmx1bO88609 Gm6623-201ENSMUST00000173570 544 ntBASIC15.11■□□□□ 0.01
Lmx1bO88609 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.11■□□□□ 0.01
Lmx1bO88609 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Lmx1bO88609 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms