Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Prom1O54990 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Prom1O54990 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
Prom1O54990 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.39■□□□□ 0.54
Prom1O54990 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Prom1O54990 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Prom1O54990 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
Prom1O54990 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Prom1O54990 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Prom1O54990 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Prom1O54990 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Gm15165-201ENSMUST00000118140 502 ntBASIC18.39■□□□□ 0.53
Prom1O54990 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.53
Prom1O54990 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC18.39■□□□□ 0.53
Prom1O54990 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.39■□□□□ 0.53
Prom1O54990 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Prom1O54990 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Prom1O54990 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Prom1O54990 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Prom1O54990 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC18.38■□□□□ 0.53
Prom1O54990 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.38■□□□□ 0.53
Prom1O54990 Rprl3-201ENSMUST00000157400 290 ntBASIC18.38■□□□□ 0.53
Prom1O54990 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Prom1O54990 Gm2651-201ENSMUST00000203560 838 ntBASIC18.38■□□□□ 0.53
Prom1O54990 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.38■□□□□ 0.53
Prom1O54990 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Prom1O54990 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.37■□□□□ 0.53
Prom1O54990 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Rarb-207ENSMUST00000225921 2756 ntBASIC18.37■□□□□ 0.53
Prom1O54990 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC18.37■□□□□ 0.53
Prom1O54990 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.37■□□□□ 0.53
Prom1O54990 Gm44430-201ENSMUST00000203376 995 ntBASIC18.37■□□□□ 0.53
Prom1O54990 Gm6376-201ENSMUST00000209407 580 ntBASIC18.37■□□□□ 0.53
Prom1O54990 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Prom1O54990 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
Prom1O54990 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Prom1O54990 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Prom1O54990 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Prom1O54990 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Prom1O54990 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.36■□□□□ 0.53
Prom1O54990 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prom1O54990 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.36■□□□□ 0.53
Prom1O54990 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC18.36■□□□□ 0.53
Prom1O54990 Mir5131-201ENSMUST00000175426 93 ntBASIC18.36■□□□□ 0.53
Prom1O54990 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC18.36■□□□□ 0.53
Prom1O54990 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC18.36■□□□□ 0.53
Prom1O54990 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prom1O54990 Rps4l-201ENSMUST00000071745 943 ntBASIC18.36■□□□□ 0.53
Prom1O54990 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Prom1O54990 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prom1O54990 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Prom1O54990 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Prom1O54990 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prom1O54990 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Prom1O54990 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Prom1O54990 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms