Protein–RNA interactions for Protein: Q99M85

Scrt1, Transcriptional repressor scratch 1, mousemouse

Predictions only

Length 348 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scrt1Q99M85 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scrt1Q99M85 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scrt1Q99M85 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Scrt1Q99M85 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Scrt1Q99M85 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Scrt1Q99M85 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Scrt1Q99M85 Scarna2-201ENSMUST00000157560 414 ntBASIC20.64■□□□□ 0.89
Scrt1Q99M85 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scrt1Q99M85 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scrt1Q99M85 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scrt1Q99M85 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scrt1Q99M85 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scrt1Q99M85 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scrt1Q99M85 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.62■□□□□ 0.89
Scrt1Q99M85 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scrt1Q99M85 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Scrt1Q99M85 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Scrt1Q99M85 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scrt1Q99M85 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scrt1Q99M85 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scrt1Q99M85 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.61■□□□□ 0.89
Scrt1Q99M85 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scrt1Q99M85 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Scrt1Q99M85 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scrt1Q99M85 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scrt1Q99M85 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scrt1Q99M85 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scrt1Q99M85 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scrt1Q99M85 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 Gm12366-201ENSMUST00000121722 873 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC20.59■□□□□ 0.89
Scrt1Q99M85 Gm30023-201ENSMUST00000197970 889 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Scrt1Q99M85 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scrt1Q99M85 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 Gm5786-201ENSMUST00000085368 882 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 Particl-201ENSMUST00000205370 1560 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.59■□□□□ 0.89
Scrt1Q99M85 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC20.58■□□□□ 0.89
Scrt1Q99M85 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC20.58■□□□□ 0.89
Scrt1Q99M85 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC20.58■□□□□ 0.89
Scrt1Q99M85 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scrt1Q99M85 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scrt1Q99M85 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Scrt1Q99M85 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
Scrt1Q99M85 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scrt1Q99M85 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scrt1Q99M85 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scrt1Q99M85 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Scrt1Q99M85 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scrt1Q99M85 Gm4799-201ENSMUST00000095396 657 ntBASIC20.56■□□□□ 0.88
Scrt1Q99M85 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scrt1Q99M85 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Scrt1Q99M85 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Scrt1Q99M85 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scrt1Q99M85 Gm16437-201ENSMUST00000025669 507 ntBASIC20.54■□□□□ 0.88
Scrt1Q99M85 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scrt1Q99M85 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scrt1Q99M85 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Scrt1Q99M85 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scrt1Q99M85 Gm11687-201ENSMUST00000118911 886 ntBASIC20.53■□□□□ 0.88
Scrt1Q99M85 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scrt1Q99M85 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scrt1Q99M85 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scrt1Q99M85 Gm9806-201ENSMUST00000051080 552 ntBASIC20.52■□□□□ 0.88
Scrt1Q99M85 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scrt1Q99M85 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scrt1Q99M85 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC20.51■□□□□ 0.87
Scrt1Q99M85 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scrt1Q99M85 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scrt1Q99M85 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scrt1Q99M85 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scrt1Q99M85 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.49■□□□□ 0.87
Scrt1Q99M85 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scrt1Q99M85 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
Scrt1Q99M85 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Scrt1Q99M85 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scrt1Q99M85 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scrt1Q99M85 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scrt1Q99M85 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Scrt1Q99M85 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Scrt1Q99M85 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Scrt1Q99M85 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Scrt1Q99M85 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Scrt1Q99M85 Gm27502-201ENSMUST00000183495 199 ntBASIC20.46■□□□□ 0.87
Scrt1Q99M85 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Scrt1Q99M85 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.44■□□□□ 0.86
Scrt1Q99M85 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Scrt1Q99M85 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Scrt1Q99M85 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC20.42■□□□□ 0.86
Scrt1Q99M85 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Scrt1Q99M85 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Scrt1Q99M85 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.41■□□□□ 0.86
Scrt1Q99M85 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scrt1Q99M85 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Scrt1Q99M85 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scrt1Q99M85 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
Scrt1Q99M85 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Scrt1Q99M85 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.39■□□□□ 0.86
Scrt1Q99M85 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 73.8 ms