Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 AL137058.3-201ENST00000624531 3099 ntBASIC6.07□□□□□ -1.44
SHANK3Q9BYB0 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 AL031119.1-201ENST00000404707 1879 ntBASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 5S_rRNA.1-201ENST00000364415 116 ntBASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 PPIAP31-201ENST00000405422 495 ntBASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 U3.35-201ENST00000408405 208 ntBASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 RN7SL98P-201ENST00000462271 300 ntBASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SHANK3Q9BYB0 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 LCMT1-AS2-202ENST00000565214 5666 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AP000580.1-201ENST00000404439 358 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 NFYAP1-201ENST00000431953 972 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 RPL6P5-201ENST00000445678 828 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 RN7SL703P-201ENST00000578485 302 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 VN1R92P-201ENST00000598511 928 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC069200.1-201ENST00000609511 323 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC009120.7-201ENST00000623452 780 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 OR51H2P-202ENST00000641424 3046 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC106871.1-201ENST00000568324 3102 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 COX5BP7-201ENST00000414780 274 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 CRYBB2P1-203ENST00000415709 538 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AL451139.1-201ENST00000434718 346 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 MRPL35P2-201ENST00000448009 511 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 RPL7P15-201ENST00000461190 712 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 CARD16-203ENST00000525374 503 ntTSL 3 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC084783.1-201ENST00000565846 910 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 HNRNPCP4-201ENST00000571636 900 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 RPL7P50-201ENST00000600588 727 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 TRIM51GP-201ENST00000534741 1350 ntBASIC6.05□□□□□ -1.44
SHANK3Q9BYB0 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 RPS26P8-201ENST00000393490 348 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AC011933.1-201ENST00000413334 321 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 RAB9AP4-201ENST00000415230 609 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 HSFY6P-201ENST00000445573 403 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AC116533.1-201ENST00000459748 321 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AC090589.1-201ENST00000473109 362 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AL133372.1-201ENST00000493565 745 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AL049830.4-201ENST00000555149 351 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AL133243.1-201ENST00000614487 366 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AC244100.1-202ENST00000621554 382 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AC039056.2-201ENST00000622261 511 ntBASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SHANK3Q9BYB0 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms