Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 AC110775.1-201ENST00000513721 462 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.57□□□□□ -1.68
FOXA1P55317 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA1P55317 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA1P55317 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.57□□□□□ -1.68
FOXA1P55317 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.57□□□□□ -1.68
FOXA1P55317 AC073869.7-201ENST00000640874 297 ntBASIC4.57□□□□□ -1.68
FOXA1P55317 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
FOXA1P55317 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
FOXA1P55317 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.57□□□□□ -1.68
FOXA1P55317 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
FOXA1P55317 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
FOXA1P55317 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 AC120036.2-201ENST00000509729 1474 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
FOXA1P55317 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 CIR1P2-201ENST00000514821 1342 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 OR56B2P-201ENST00000317102 954 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA1P55317 MIR765-201ENST00000390226 114 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA1P55317 AC093162.1-201ENST00000419682 124 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA1P55317 HSPE1P27-201ENST00000430808 296 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AC112498.1-201ENST00000444401 332 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 SLC25A18P1-201ENST00000449385 454 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AC079168.2-201ENST00000453977 416 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 snoU13.20-201ENST00000459180 104 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
FOXA1P55317 AC109462.1-201ENST00000491087 368 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AC104971.1-201ENST00000495117 578 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA1P55317 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA1P55317 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA1P55317 BTF3P13-201ENST00000513224 490 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA1P55317 BUD31P1-201ENST00000521828 359 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA1P55317 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA1P55317 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA1P55317 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA1P55317 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.56□□□□□ -1.68
FOXA1P55317 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA1P55317 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.56□□□□□ -1.68
FOXA1P55317 SUMO2P15-201ENST00000604285 278 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AC009163.6-201ENST00000612367 342 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AL512624.1-201ENST00000613638 469 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 EIF3FP1-201ENST00000613970 806 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.56□□□□□ -1.68
FOXA1P55317 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.56□□□□□ -1.68
FOXA1P55317 SAMMSON-226ENST00000642089 1582 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 AL031119.1-201ENST00000404707 1879 ntBASIC4.56□□□□□ -1.68
FOXA1P55317 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
FOXA1P55317 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA1P55317 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA1P55317 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
FOXA1P55317 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 MIR195-201ENST00000385194 87 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 EI24P3-201ENST00000399046 1062 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 AC114755.2-201ENST00000413520 361 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
FOXA1P55317 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.55□□□□□ -1.68
FOXA1P55317 RPL12P43-201ENST00000420608 499 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA1P55317 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 TRY2P-201ENST00000448860 689 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 AC073850.1-201ENST00000449243 255 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.55□□□□□ -1.68
FOXA1P55317 AURKAPS2-201ENST00000454983 333 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 AC074386.1-201ENST00000476560 767 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 RN7SL177P-201ENST00000476596 299 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 RNA5SP34-201ENST00000516887 130 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA1P55317 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC4.55□□□□□ -1.68
FOXA1P55317 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA1P55317 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA1P55317 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA1P55317 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.55□□□□□ -1.68
FOXA1P55317 FAM27B-201ENST00000610601 213 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
FOXA1P55317 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms