Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC017104.4-201ENST00000636283 1592 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA3P55318 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
FOXA3P55318 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.63□□□□□ -1.83
FOXA3P55318 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 OR56A4-201ENST00000330728 1209 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RNA5SP319-201ENST00000362768 119 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 SNORA70.10-201ENST00000384515 134 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-1320P-201ENST00000390838 107 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-1269P-201ENST00000391139 107 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 LAP3P1-201ENST00000403648 294 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AL160275.2-201ENST00000412010 394 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AL356968.2-201ENST00000412769 1257 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 OR2X1P-201ENST00000421144 687 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 TNPO1P1-201ENST00000423641 1138 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 AC005033.1-201ENST00000428904 813 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 RBMY2TP-201ENST00000451162 947 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AC073476.1-201ENST00000452854 407 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-599P-201ENST00000459383 107 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-1193P-201ENST00000459461 107 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AC098583.1-201ENST00000480875 255 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AL136038.1-201ENST00000497246 351 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 UGT2A3P7-201ENST00000510485 734 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 GTF2F2P1-201ENST00000511083 675 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-941P-201ENST00000516346 108 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA3P55318 RBM7-208ENST00000545678 867 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA3P55318 AC125612.1-201ENST00000547580 377 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA3P55318 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC3.63□□□□□ -1.83
FOXA3P55318 AC138207.8-204ENST00000579588 527 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA3P55318 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 HMGB2P1-201ENST00000591146 634 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AC079315.1-201ENST00000602952 623 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.63□□□□□ -1.83
FOXA3P55318 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-368P-201ENST00000620928 107 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 MIR6806-201ENST00000622141 64 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 RNU6-538P-201ENST00000622329 107 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 TEX41-293ENST00000630451 690 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 CYP4F35P-202ENST00000636121 390 ntBASIC3.63□□□□□ -1.83
FOXA3P55318 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
FOXA3P55318 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA3P55318 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
FOXA3P55318 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA3P55318 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
FOXA3P55318 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.62□□□□□ -1.83
FOXA3P55318 AC105074.1-201ENST00000623380 3095 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA3P55318 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.62□□□□□ -1.83
FOXA3P55318 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC3.62□□□□□ -1.83
FOXA3P55318 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 RNA5SP234-201ENST00000363916 119 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 RNA5SP122-201ENST00000384457 108 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 LYPLA1P3-201ENST00000402650 695 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 AL590609.2-201ENST00000421430 368 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA3P55318 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA3P55318 AC073109.1-201ENST00000445066 978 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 AL354714.3-201ENST00000447284 493 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA3P55318 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA3P55318 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA3P55318 Z92846.1-201ENST00000456203 268 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 PSMC1P13-201ENST00000458195 985 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 OR2A1-AS1-202ENST00000467944 422 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 RN7SL809P-201ENST00000482040 297 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA3P55318 MYL12AP1-201ENST00000518490 515 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA3P55318 AC018442.3-201ENST00000523025 183 ntBASIC3.62□□□□□ -1.83
FOXA3P55318 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.62□□□□□ -1.83
FOXA3P55318 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.62□□□□□ -1.83
FOXA3P55318 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms