Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC004865.1-201ENST00000442276 1003 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC245291.3-201ENST00000443400 292 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC092601.1-201ENST00000444526 383 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 POU5F1P5-201ENST00000445059 658 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 CDC27P1-201ENST00000445384 715 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 RNF148-202ENST00000447240 839 ntTSL 2 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 OTX2P1-201ENST00000450956 354 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC004815.1-201ENST00000484185 331 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 TPT1P3-201ENST00000492841 512 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 KHDC1P1-201ENST00000511053 508 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 GTF2F2P1-201ENST00000511083 675 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC025465.4-201ENST00000513422 638 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 CYP4F27P-201ENST00000514557 494 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 DUXAP2-201ENST00000519198 589 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AP001646.1-201ENST00000527936 915 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL139174.1-201ENST00000531489 886 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 RPA2P3-201ENST00000533268 770 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC005242.1-201ENST00000585658 438 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL031281.1-201ENST00000604049 488 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC064836.2-201ENST00000609491 462 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AL121757.2-201ENST00000611223 313 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC100793.4-201ENST00000613683 429 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MIR6811-201ENST00000620409 58 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 FRG1DP-201ENST00000635586 771 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 OR8A1-204ENST00000642111 1145 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 MTCO1P28-201ENST00000574177 1528 ntBASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
CCDC39Q9UFE4 ZFP62-201ENST00000502412 3415 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 EIF3EP1-201ENST00000433978 1316 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 OR4G2P-201ENST00000328113 903 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 MIR421-201ENST00000365696 85 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 RNU6-481P-201ENST00000384194 107 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 CHMP1B2P-201ENST00000399581 597 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 HNRNPA1P29-201ENST00000426409 879 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 BX276092.6-201ENST00000430476 250 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 RPS3AP38-201ENST00000435889 763 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 FGF7P6-202ENST00000451282 293 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 ZNF114P1-201ENST00000453500 292 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 BX276092.8-201ENST00000455722 250 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 RPL12P31-201ENST00000478433 450 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 OR4G11P-201ENST00000492842 939 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 MTCO2P30-201ENST00000503662 364 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC109458.1-201ENST00000508858 316 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 KCTD9P6-201ENST00000522306 950 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 OR4V1P-201ENST00000525394 1140 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 ELOCP32-201ENST00000548625 324 ntBASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.05□□□□□ -1.28
CCDC39Q9UFE4 AC090695.1-201ENST00000561269 1222 ntBASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms