Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP001357.1-201ENST00000586304 1053 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.9□□□□□ -1.47
BRCA1P38398 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 MIR6133-201ENST00000617057 108 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 AC023632.6-201ENST00000624338 2177 ntBASIC5.9□□□□□ -1.47
BRCA1P38398 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
BRCA1P38398 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.89□□□□□ -1.47
BRCA1P38398 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
BRCA1P38398 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
BRCA1P38398 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
BRCA1P38398 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
BRCA1P38398 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.89□□□□□ -1.47
BRCA1P38398 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.89□□□□□ -1.47
BRCA1P38398 AC002525.1-201ENST00000624392 1622 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 AC009779.8-201ENST00000641684 4384 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 MIR659-201ENST00000384963 97 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 U3.32-201ENST00000408116 212 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 AL356387.2-201ENST00000422272 243 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 PHBP16-201ENST00000446318 950 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 IGLVIV-65-201ENST00000517313 360 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.89□□□□□ -1.47
BRCA1P38398 AC116553.2-201ENST00000564203 463 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.89□□□□□ -1.47
BRCA1P38398 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.89□□□□□ -1.47
BRCA1P38398 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.89□□□□□ -1.47
BRCA1P38398 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.89□□□□□ -1.47
BRCA1P38398 AC010632.3-201ENST00000611377 369 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 AL669831.5-218ENST00000591702 1873 ntBASIC5.89□□□□□ -1.47
BRCA1P38398 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
BRCA1P38398 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 SOCS5P3-201ENST00000425115 1576 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.88□□□□□ -1.47
BRCA1P38398 AC007159.1-201ENST00000566529 4706 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
BRCA1P38398 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.88□□□□□ -1.47
BRCA1P38398 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.88□□□□□ -1.47
BRCA1P38398 RPL21P126-201ENST00000470049 478 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.88□□□□□ -1.47
BRCA1P38398 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.88□□□□□ -1.47
BRCA1P38398 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 RN7SL703P-201ENST00000578485 302 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.88□□□□□ -1.47
BRCA1P38398 AL023881.1-201ENST00000621088 301 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.88□□□□□ -1.47
BRCA1P38398 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.88□□□□□ -1.47
BRCA1P38398 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.88□□□□□ -1.47
BRCA1P38398 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
BRCA1P38398 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
BRCA1P38398 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.88□□□□□ -1.47
BRCA1P38398 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.88□□□□□ -1.47
BRCA1P38398 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
BRCA1P38398 SNORD46.1-201ENST00000364139 104 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 SNORA71.2-201ENST00000364941 134 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AL356095.1-201ENST00000417217 199 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC140479.3-201ENST00000418944 1126 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC009238.2-201ENST00000431026 355 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.88□□□□□ -1.47
BRCA1P38398 AL132765.1-201ENST00000434165 553 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC108463.1-201ENST00000450258 347 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC5.88□□□□□ -1.47
BRCA1P38398 RPL36AP41-201ENST00000493820 306 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC022916.3-201ENST00000592961 742 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.88□□□□□ -1.47
BRCA1P38398 U3.53-201ENST00000628922 216 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 AC093297.3-201ENST00000607056 2517 ntBASIC5.88□□□□□ -1.47
BRCA1P38398 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
BRCA1P38398 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
BRCA1P38398 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms