Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
CCDC88AQ3V6T2 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 RPL21P67-201ENST00000402896 478 ntBASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 NRBF2P2-201ENST00000413087 861 ntBASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 RPL12P34-201ENST00000424532 479 ntBASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 RN7SL290P-201ENST00000578661 300 ntBASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
CCDC88AQ3V6T2 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AC068446.1-201ENST00000556425 1549 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AC044797.1-201ENST00000445744 679 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 CEACAMP6-201ENST00000452007 574 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AK3P4-201ENST00000504283 583 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AC098976.1-201ENST00000513014 541 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 RNU2-30P-201ENST00000516209 141 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AL449283.1-201ENST00000602631 3403 ntBASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
CCDC88AQ3V6T2 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 OR1L6-202ENST00000373684 1044 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC007224.1-201ENST00000564410 144 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 KPNA2P3-201ENST00000584190 848 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 DLEU1_1.1-201ENST00000618107 190 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AL137918.1-201ENST00000624542 1922 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 RN7SKP114-201ENST00000410327 279 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 RPL7P57-201ENST00000423238 740 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC026688.1-201ENST00000520639 1168 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC092709.1-201ENST00000521355 1045 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC027369.5-201ENST00000533838 755 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 RPL12P25-202ENST00000598100 674 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 AC002044.3-201ENST00000623314 541 ntBASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
CCDC88AQ3V6T2 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
CCDC88AQ3V6T2 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms