Protein–RNA interactions for Protein: S4R1E0

H2afb1, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb1S4R1E0 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 H2-K2-201ENSMUST00000174250 1049 ntBASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
H2afb1S4R1E0 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Gm37292-201ENSMUST00000192062 758 ntBASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
H2afb1S4R1E0 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
H2afb1S4R1E0 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
H2afb1S4R1E0 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
H2afb1S4R1E0 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Nrn1-203ENSMUST00000223611 1443 ntBASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
H2afb1S4R1E0 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Gm10517-202ENSMUST00000192970 758 ntBASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Gm9694-201ENSMUST00000193347 1189 ntBASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Trmt13-210ENSMUST00000198454 880 ntBASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Slc35b2-207ENSMUST00000226086 850 ntBASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
H2afb1S4R1E0 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
H2afb1S4R1E0 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
H2afb1S4R1E0 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
H2afb1S4R1E0 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
H2afb1S4R1E0 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms