Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.84■□□□□ 0.77
Scn11aQ9R053 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Scn11aQ9R053 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Scn11aQ9R053 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn11aQ9R053 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.83■□□□□ 0.77
Scn11aQ9R053 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC19.83■□□□□ 0.77
Scn11aQ9R053 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.83■□□□□ 0.77
Scn11aQ9R053 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn11aQ9R053 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Gm36967-201ENSMUST00000193814 266 ntBASIC19.83■□□□□ 0.76
Scn11aQ9R053 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC19.83■□□□□ 0.76
Scn11aQ9R053 AC159093.1-201ENSMUST00000227779 380 ntBASIC19.83■□□□□ 0.76
Scn11aQ9R053 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn11aQ9R053 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC19.83■□□□□ 0.76
Scn11aQ9R053 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.82■□□□□ 0.76
Scn11aQ9R053 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.82■□□□□ 0.76
Scn11aQ9R053 Rps4l-201ENSMUST00000071745 943 ntBASIC19.82■□□□□ 0.76
Scn11aQ9R053 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Scn11aQ9R053 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Rarb-207ENSMUST00000225921 2756 ntBASIC19.81■□□□□ 0.76
Scn11aQ9R053 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
Scn11aQ9R053 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm13312-201ENSMUST00000119631 718 ntBASIC19.8■□□□□ 0.76
Scn11aQ9R053 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm8000-201ENSMUST00000188378 592 ntBASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm11779-201ENSMUST00000118541 368 ntBASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm1401-201ENSMUST00000122048 772 ntBASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm43575-201ENSMUST00000196420 516 ntBASIC19.8■□□□□ 0.76
Scn11aQ9R053 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Scn11aQ9R053 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Gm4995-201ENSMUST00000117247 432 ntBASIC19.79■□□□□ 0.76
Scn11aQ9R053 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Scn11aQ9R053 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Scn11aQ9R053 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Scn11aQ9R053 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms