Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Gm6728-201ENSMUST00000178117 1065 ntBASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Gm10517-202ENSMUST00000192970 758 ntBASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Smc1aQ9CU62 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Smc1aQ9CU62 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Gm18032-201ENSMUST00000222541 538 ntBASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Smc1aQ9CU62 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Smc1aQ9CU62 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 AA414768-201ENSMUST00000121924 1257 ntBASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Gm38027-201ENSMUST00000192315 235 ntBASIC18.7■□□□□ 0.58
Smc1aQ9CU62 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Smc1aQ9CU62 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Smc1aQ9CU62 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms