Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ccdc9Q8VC31 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Ccdc9Q8VC31 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ccdc9Q8VC31 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Gm10584-201ENSMUST00000207036 2628 ntBASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Gm26833-201ENSMUST00000180899 440 ntBASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Ccdc9Q8VC31 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ccdc9Q8VC31 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Ccdc9Q8VC31 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Gm43017-201ENSMUST00000198296 752 ntBASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ccdc9Q8VC31 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ccdc9Q8VC31 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms