Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ushbp1Q8R370 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ushbp1Q8R370 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Gm7284-201ENSMUST00000131667 944 ntBASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Gm27000-201ENSMUST00000182943 842 ntBASIC18.77■□□□□ 0.6
Ushbp1Q8R370 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.77■□□□□ 0.6
Ushbp1Q8R370 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ushbp1Q8R370 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ushbp1Q8R370 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC18.77■□□□□ 0.59
Ushbp1Q8R370 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Haglr-201ENSMUST00000100000 2085 ntBASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ushbp1Q8R370 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ushbp1Q8R370 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Gm25016-201ENSMUST00000158399 131 ntBASIC18.74■□□□□ 0.59
Ushbp1Q8R370 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ushbp1Q8R370 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms