Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Gm13186-201ENSMUST00000118031 316 ntBASIC20.25■□□□□ 0.83
Brf1Q8CFK2 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Gm10231-201ENSMUST00000181584 441 ntBASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Gm10175-202ENSMUST00000208752 441 ntBASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Mir1668-201ENSMUST00000184114 107 ntBASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.24■□□□□ 0.83
Brf1Q8CFK2 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Brf1Q8CFK2 Gm6190-201ENSMUST00000220683 1374 ntBASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Brf1Q8CFK2 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 AC134329.2-201ENSMUST00000217897 428 ntBASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Brf1Q8CFK2 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Brf1Q8CFK2 Gm18032-201ENSMUST00000222541 538 ntBASIC20.2■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms