Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Actl10-202ENSMUST00000226583 1501 ntBASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Gm13474-201ENSMUST00000122466 815 ntBASIC18.5■□□□□ 0.55
Trim9Q8C7M3 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Gm7889-201ENSMUST00000185591 958 ntBASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trim9Q8C7M3 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Phf7-203ENSMUST00000226565 1971 ntBASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trim9Q8C7M3 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trim9Q8C7M3 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Mir6982-201ENSMUST00000184354 68 ntBASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trim9Q8C7M3 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Gm7213-201ENSMUST00000215977 950 ntBASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Gm10566-201ENSMUST00000086739 996 ntBASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.46■□□□□ 0.55
Trim9Q8C7M3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trim9Q8C7M3 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms