Protein–RNA interactions for Protein: Q8BXJ2

Trerf1, Transcriptional-regulating factor 1, mousemouse

Predictions only

Length 1,205 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trerf1Q8BXJ2 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trerf1Q8BXJ2 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Gm24841-201ENSMUST00000158676 357 ntBASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trerf1Q8BXJ2 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC17.66■□□□□ 0.42
Trerf1Q8BXJ2 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.65■□□□□ 0.42
Trerf1Q8BXJ2 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trerf1Q8BXJ2 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms