Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Gm25016-201ENSMUST00000158399 131 ntBASIC19.79■□□□□ 0.76
Trim56Q80VI1 Gm17808-201ENSMUST00000200859 894 ntBASIC19.79■□□□□ 0.76
Trim56Q80VI1 Gm18421-201ENSMUST00000204122 625 ntBASIC19.79■□□□□ 0.76
Trim56Q80VI1 AC122351.1-201ENSMUST00000220467 126 ntBASIC19.79■□□□□ 0.76
Trim56Q80VI1 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim56Q80VI1 Zfp264-201ENSMUST00000208656 1563 ntBASIC19.78■□□□□ 0.76
Trim56Q80VI1 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Trim56Q80VI1 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Zkscan4-202ENSMUST00000225845 1506 ntBASIC19.77■□□□□ 0.76
Trim56Q80VI1 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Trim56Q80VI1 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC19.77■□□□□ 0.76
Trim56Q80VI1 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Trim56Q80VI1 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Trim56Q80VI1 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.76■□□□□ 0.75
Trim56Q80VI1 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Gm33142-201ENSMUST00000193913 867 ntBASIC19.75■□□□□ 0.75
Trim56Q80VI1 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim56Q80VI1 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Trim56Q80VI1 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Gm6623-201ENSMUST00000173570 544 ntBASIC19.74■□□□□ 0.75
Trim56Q80VI1 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Trim56Q80VI1 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms