Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Gm27459-201ENSMUST00000184860 107 ntBASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 AC133598.3-202ENSMUST00000224219 531 ntBASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smchd1Q6P5D8 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smchd1Q6P5D8 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smchd1Q6P5D8 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smchd1Q6P5D8 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Gm44430-201ENSMUST00000203376 995 ntBASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Birc2-201ENSMUST00000054878 378 ntBASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Smchd1Q6P5D8 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smchd1Q6P5D8 Gm27867-201ENSMUST00000184778 125 ntBASIC18.33■□□□□ 0.53
Smchd1Q6P5D8 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC18.33■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms