Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm43338-201ENSMUST00000198617 2223 ntBASIC21.78■■□□□ 1.08
Trim28Q62318 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Trim28Q62318 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Trim28Q62318 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim28Q62318 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim28Q62318 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC21.77■■□□□ 1.08
Trim28Q62318 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC21.77■■□□□ 1.08
Trim28Q62318 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC21.77■■□□□ 1.08
Trim28Q62318 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim28Q62318 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Trim28Q62318 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Trim28Q62318 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.76■■□□□ 1.07
Trim28Q62318 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC21.76■■□□□ 1.07
Trim28Q62318 Rprl3-201ENSMUST00000157400 290 ntBASIC21.76■■□□□ 1.07
Trim28Q62318 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 CT009713.7-201ENSMUST00000224689 571 ntBASIC21.76■■□□□ 1.07
Trim28Q62318 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC21.76■■□□□ 1.07
Trim28Q62318 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim28Q62318 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Trim28Q62318 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC21.75■■□□□ 1.07
Trim28Q62318 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Gm9889-202ENSMUST00000206983 1577 ntBASIC21.75■■□□□ 1.07
Trim28Q62318 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim28Q62318 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim28Q62318 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim28Q62318 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Trim28Q62318 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Gm36967-201ENSMUST00000193814 266 ntBASIC21.74■■□□□ 1.07
Trim28Q62318 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Gm16401-202ENSMUST00000197463 2074 ntBASIC21.74■■□□□ 1.07
Trim28Q62318 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim28Q62318 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Trim28Q62318 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trim28Q62318 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trim28Q62318 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Trim28Q62318 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim28Q62318 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim28Q62318 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trim28Q62318 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim28Q62318 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim28Q62318 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC21.72■■□□□ 1.07
Trim28Q62318 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC21.72■■□□□ 1.07
Trim28Q62318 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC21.72■■□□□ 1.07
Trim28Q62318 AC108846.1-201ENSMUST00000214531 513 ntBASIC21.72■■□□□ 1.07
Trim28Q62318 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC21.72■■□□□ 1.07
Trim28Q62318 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim28Q62318 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC21.71■■□□□ 1.07
Trim28Q62318 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Trim28Q62318 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim28Q62318 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim28Q62318 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
Trim28Q62318 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim28Q62318 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Trim28Q62318 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim28Q62318 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
Trim28Q62318 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim28Q62318 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Trim28Q62318 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim28Q62318 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Trim28Q62318 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim28Q62318 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 16 ms