Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 Iqck-206ENSMUST00000208658 2891 ntBASIC18.76■□□□□ 0.59
Col11a1Q61245 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC18.76■□□□□ 0.59
Col11a1Q61245 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.76■□□□□ 0.59
Col11a1Q61245 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC18.76■□□□□ 0.59
Col11a1Q61245 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col11a1Q61245 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC18.75■□□□□ 0.59
Col11a1Q61245 Gm5837-201ENSMUST00000191844 1369 ntBASIC18.75■□□□□ 0.59
Col11a1Q61245 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC18.75■□□□□ 0.59
Col11a1Q61245 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Col11a1Q61245 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.75■□□□□ 0.59
Col11a1Q61245 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col11a1Q61245 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Gm9172-201ENSMUST00000212092 954 ntBASIC18.74■□□□□ 0.59
Col11a1Q61245 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.74■□□□□ 0.59
Col11a1Q61245 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Col11a1Q61245 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Col11a1Q61245 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Gm7222-201ENSMUST00000117512 906 ntBASIC18.74■□□□□ 0.59
Col11a1Q61245 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.74■□□□□ 0.59
Col11a1Q61245 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Col11a1Q61245 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Col11a1Q61245 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.74■□□□□ 0.59
Col11a1Q61245 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.74■□□□□ 0.59
Col11a1Q61245 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col11a1Q61245 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.74■□□□□ 0.59
Col11a1Q61245 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.73■□□□□ 0.59
Col11a1Q61245 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col11a1Q61245 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col11a1Q61245 Gm26308-201ENSMUST00000157768 69 ntBASIC18.73■□□□□ 0.59
Col11a1Q61245 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.73■□□□□ 0.59
Col11a1Q61245 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.73■□□□□ 0.59
Col11a1Q61245 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col11a1Q61245 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col11a1Q61245 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col11a1Q61245 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col11a1Q61245 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Col11a1Q61245 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Col11a1Q61245 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC18.72■□□□□ 0.59
Col11a1Q61245 Gm7229-201ENSMUST00000214719 1007 ntBASIC18.72■□□□□ 0.59
Col11a1Q61245 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col11a1Q61245 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Col11a1Q61245 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.72■□□□□ 0.59
Col11a1Q61245 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC18.72■□□□□ 0.59
Col11a1Q61245 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC18.72■□□□□ 0.59
Col11a1Q61245 AC124549.3-201ENSMUST00000225541 367 ntBASIC18.72■□□□□ 0.59
Col11a1Q61245 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col11a1Q61245 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col11a1Q61245 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC18.71■□□□□ 0.59
Col11a1Q61245 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Col11a1Q61245 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Col11a1Q61245 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col11a1Q61245 Mir8117-201ENSMUST00000184773 107 ntBASIC18.71■□□□□ 0.59
Col11a1Q61245 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col11a1Q61245 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.71■□□□□ 0.59
Col11a1Q61245 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Col11a1Q61245 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col11a1Q61245 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Col11a1Q61245 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col11a1Q61245 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.7■□□□□ 0.58
Col11a1Q61245 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.7■□□□□ 0.58
Col11a1Q61245 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Col11a1Q61245 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC18.7■□□□□ 0.58
Col11a1Q61245 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms