Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vps54Q5SPW0 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps54Q5SPW0 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Gm16401-202ENSMUST00000197463 2074 ntBASIC20.12■□□□□ 0.81
Vps54Q5SPW0 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Gm33142-201ENSMUST00000193913 867 ntBASIC20.11■□□□□ 0.81
Vps54Q5SPW0 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.11■□□□□ 0.81
Vps54Q5SPW0 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps54Q5SPW0 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Gm18421-201ENSMUST00000204122 625 ntBASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps54Q5SPW0 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Gm6623-201ENSMUST00000173570 544 ntBASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vps54Q5SPW0 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms