Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav5d-4Q5R1F6 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav5d-4Q5R1F6 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav5d-4Q5R1F6 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav5d-4Q5R1F6 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav5d-4Q5R1F6 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trav5d-4Q5R1F6 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Gm3375-201ENSMUST00000203929 796 ntBASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Il3ra-202ENSMUST00000223589 738 ntBASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trav5d-4Q5R1F6 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Gm13181-201ENSMUST00000120117 1069 ntBASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Hivep3-201ENSMUST00000084306 2973 ntBASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Trav5d-4Q5R1F6 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Gm18958-201ENSMUST00000174258 762 ntBASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Mir5122-201ENSMUST00000175004 89 ntBASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Gm27000-201ENSMUST00000182943 842 ntBASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
Trav5d-4Q5R1F6 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
Trav5d-4Q5R1F6 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 Gm21814-202ENSMUST00000203277 873 ntBASIC14.39□□□□□ -0.11
Trav5d-4Q5R1F6 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms