Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp28Q5I043 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp28Q5I043 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.05■□□□□ 0.64
Usp28Q5I043 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC19.05■□□□□ 0.64
Usp28Q5I043 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
Usp28Q5I043 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.05■□□□□ 0.64
Usp28Q5I043 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Usp28Q5I043 AC069562.2-201ENSMUST00000224644 2146 ntBASIC19.04■□□□□ 0.64
Usp28Q5I043 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Usp28Q5I043 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Gm18958-201ENSMUST00000174258 762 ntBASIC19.04■□□□□ 0.64
Usp28Q5I043 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Usp28Q5I043 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.04■□□□□ 0.64
Usp28Q5I043 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Usp28Q5I043 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Usp28Q5I043 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Usp28Q5I043 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Usp28Q5I043 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Usp28Q5I043 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC19.03■□□□□ 0.64
Usp28Q5I043 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
Usp28Q5I043 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.03■□□□□ 0.64
Usp28Q5I043 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC19.03■□□□□ 0.64
Usp28Q5I043 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Usp28Q5I043 Timm23-208ENSMUST00000226683 750 ntBASIC19.03■□□□□ 0.64
Usp28Q5I043 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Usp28Q5I043 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Usp28Q5I043 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Usp28Q5I043 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Usp28Q5I043 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Usp28Q5I043 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Usp28Q5I043 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Usp28Q5I043 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Usp28Q5I043 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Usp28Q5I043 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Usp28Q5I043 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Usp28Q5I043 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.01■□□□□ 0.63
Usp28Q5I043 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
Usp28Q5I043 Gm715-201ENSMUST00000117865 831 ntBASIC19.01■□□□□ 0.63
Usp28Q5I043 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.01■□□□□ 0.63
Usp28Q5I043 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.01■□□□□ 0.63
Usp28Q5I043 Gm3375-201ENSMUST00000203929 796 ntBASIC19.01■□□□□ 0.63
Usp28Q5I043 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.01■□□□□ 0.63
Usp28Q5I043 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.01■□□□□ 0.63
Usp28Q5I043 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.01■□□□□ 0.63
Usp28Q5I043 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.01■□□□□ 0.63
Usp28Q5I043 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
Usp28Q5I043 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Usp28Q5I043 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Usp28Q5I043 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Usp28Q5I043 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms