Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Upf3aQ3ULJ3 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Gm44430-201ENSMUST00000203376 995 ntBASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Gm9449-201ENSMUST00000207265 1011 ntBASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Upf3aQ3ULJ3 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Gm8969-201ENSMUST00000199694 526 ntBASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Upf3aQ3ULJ3 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Upf3aQ3ULJ3 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Gm15165-201ENSMUST00000118140 502 ntBASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Gm44454-201ENSMUST00000198541 138 ntBASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Upf3aQ3ULJ3 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Gm27867-201ENSMUST00000184778 125 ntBASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Gm6296-201ENSMUST00000222599 943 ntBASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3aQ3ULJ3 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms