Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
Col17a1Q07563 Gm9899-201ENSMUST00000065519 555 ntBASIC25.85■■□□□ 1.73
Col17a1Q07563 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Col17a1Q07563 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Col17a1Q07563 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Col17a1Q07563 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC25.85■■□□□ 1.73
Col17a1Q07563 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC25.85■■□□□ 1.73
Col17a1Q07563 Gm12151-201ENSMUST00000121374 290 ntBASIC25.85■■□□□ 1.73
Col17a1Q07563 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Col17a1Q07563 Gm27646-201ENSMUST00000183989 110 ntBASIC25.85■■□□□ 1.73
Col17a1Q07563 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC25.85■■□□□ 1.73
Col17a1Q07563 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Col17a1Q07563 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Col17a1Q07563 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC25.84■■□□□ 1.73
Col17a1Q07563 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC25.84■■□□□ 1.73
Col17a1Q07563 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Col17a1Q07563 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Col17a1Q07563 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Col17a1Q07563 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC25.83■■□□□ 1.73
Col17a1Q07563 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Col17a1Q07563 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC25.83■■□□□ 1.73
Col17a1Q07563 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
Col17a1Q07563 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC25.83■■□□□ 1.72
Col17a1Q07563 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC25.82■■□□□ 1.72
Col17a1Q07563 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC25.82■■□□□ 1.72
Col17a1Q07563 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC25.82■■□□□ 1.72
Col17a1Q07563 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC25.82■■□□□ 1.72
Col17a1Q07563 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
Col17a1Q07563 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC25.82■■□□□ 1.72
Col17a1Q07563 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Col17a1Q07563 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
Col17a1Q07563 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Col17a1Q07563 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
Col17a1Q07563 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Gm4899-201ENSMUST00000178708 719 ntBASIC25.81■■□□□ 1.72
Col17a1Q07563 Mir7085-201ENSMUST00000184353 66 ntBASIC25.81■■□□□ 1.72
Col17a1Q07563 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
Col17a1Q07563 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC25.81■■□□□ 1.72
Col17a1Q07563 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Col17a1Q07563 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Col17a1Q07563 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Col17a1Q07563 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Gm12892-201ENSMUST00000117367 1146 ntBASIC25.8■■□□□ 1.72
Col17a1Q07563 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC25.8■■□□□ 1.72
Col17a1Q07563 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Gm9885-202ENSMUST00000186234 2209 ntBASIC25.8■■□□□ 1.72
Col17a1Q07563 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Col17a1Q07563 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Gm12490-201ENSMUST00000120255 560 ntBASIC25.79■■□□□ 1.72
Col17a1Q07563 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC25.79■■□□□ 1.72
Col17a1Q07563 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
Col17a1Q07563 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC25.79■■□□□ 1.72
Col17a1Q07563 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Gm18889-201ENSMUST00000174284 929 ntBASIC25.79■■□□□ 1.72
Col17a1Q07563 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Col17a1Q07563 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Col17a1Q07563 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Col17a1Q07563 AC159621.2-201ENSMUST00000223519 1326 ntBASIC25.78■■□□□ 1.72
Col17a1Q07563 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Col17a1Q07563 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC25.78■■□□□ 1.72
Col17a1Q07563 Gm9794-201ENSMUST00000202370 423 ntBASIC25.78■■□□□ 1.72
Col17a1Q07563 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC25.78■■□□□ 1.72
Col17a1Q07563 AC114585.2-202ENSMUST00000228094 426 ntBASIC25.78■■□□□ 1.72
Col17a1Q07563 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Col17a1Q07563 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC25.77■■□□□ 1.72
Col17a1Q07563 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Col17a1Q07563 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC25.77■■□□□ 1.72
Col17a1Q07563 Gm43272-201ENSMUST00000200599 1584 ntBASIC25.77■■□□□ 1.72
Col17a1Q07563 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Col17a1Q07563 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC25.77■■□□□ 1.72
Col17a1Q07563 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Col17a1Q07563 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Col17a1Q07563 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
Col17a1Q07563 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms