Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
Sox3P53784 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC16.03■□□□□ 0.16
Sox3P53784 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Sox3P53784 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Sox3P53784 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Sox3P53784 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Sox3P53784 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Sox3P53784 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Sox3P53784 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Sox3P53784 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.02■□□□□ 0.16
Sox3P53784 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC16.02■□□□□ 0.16
Sox3P53784 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Sox3P53784 Gm34391-201ENSMUST00000203706 907 ntBASIC16.02■□□□□ 0.16
Sox3P53784 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Sox3P53784 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Sox3P53784 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Sox3P53784 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Sox3P53784 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Sox3P53784 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Sox3P53784 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.02■□□□□ 0.15
Sox3P53784 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.02■□□□□ 0.15
Sox3P53784 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.02■□□□□ 0.15
Sox3P53784 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Sox3P53784 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Sox3P53784 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Sox3P53784 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Gm9694-201ENSMUST00000193347 1189 ntBASIC16.01■□□□□ 0.15
Sox3P53784 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC16.01■□□□□ 0.15
Sox3P53784 Gm7370-201ENSMUST00000219471 767 ntBASIC16.01■□□□□ 0.15
Sox3P53784 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Sox3P53784 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Sox3P53784 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Sox3P53784 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC16■□□□□ 0.15
Sox3P53784 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
Sox3P53784 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Sox3P53784 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Sox3P53784 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Sox3P53784 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC15.99■□□□□ 0.15
Sox3P53784 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC15.99■□□□□ 0.15
Sox3P53784 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Sox3P53784 Gm28659-201ENSMUST00000188013 759 ntBASIC15.99■□□□□ 0.15
Sox3P53784 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC15.99■□□□□ 0.15
Sox3P53784 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.99■□□□□ 0.15
Sox3P53784 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC15.99■□□□□ 0.15
Sox3P53784 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Sox3P53784 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms