Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Sox1P53783 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
Sox1P53783 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Sox1P53783 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Sox1P53783 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Sox1P53783 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Sox1P53783 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC17.1■□□□□ 0.33
Sox1P53783 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sox1P53783 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Sox1P53783 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
Sox1P53783 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC17.1■□□□□ 0.33
Sox1P53783 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.1■□□□□ 0.33
Sox1P53783 Arhgef33-209ENSMUST00000225223 714 ntBASIC17.1■□□□□ 0.33
Sox1P53783 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Sox1P53783 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Sox1P53783 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Sox1P53783 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Gm11424-201ENSMUST00000121929 829 ntBASIC17.09■□□□□ 0.33
Sox1P53783 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
Sox1P53783 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.09■□□□□ 0.33
Sox1P53783 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Sox1P53783 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.09■□□□□ 0.33
Sox1P53783 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Sox1P53783 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Sox1P53783 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Sox1P53783 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Sox1P53783 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Sox1P53783 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Sox1P53783 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Sox1P53783 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Sox1P53783 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.08■□□□□ 0.32
Sox1P53783 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.08■□□□□ 0.32
Sox1P53783 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC17.08■□□□□ 0.32
Sox1P53783 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Sox1P53783 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Sox1P53783 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Sox1P53783 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 Tgds-204ENSMUST00000228543 1594 ntBASIC17.07■□□□□ 0.32
Sox1P53783 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.07■□□□□ 0.32
Sox1P53783 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.07■□□□□ 0.32
Sox1P53783 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 Gm11780-201ENSMUST00000136880 516 ntBASIC17.07■□□□□ 0.32
Sox1P53783 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.07■□□□□ 0.32
Sox1P53783 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC17.07■□□□□ 0.32
Sox1P53783 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.07■□□□□ 0.32
Sox1P53783 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
Sox1P53783 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC17.07■□□□□ 0.32
Sox1P53783 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.07■□□□□ 0.32
Sox1P53783 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.07■□□□□ 0.32
Sox1P53783 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sox1P53783 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sox1P53783 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms