Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Shmt1P50431 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Shmt1P50431 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.73■□□□□ 0.43
Shmt1P50431 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.73■□□□□ 0.43
Shmt1P50431 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.73■□□□□ 0.43
Shmt1P50431 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.73■□□□□ 0.43
Shmt1P50431 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC17.73■□□□□ 0.43
Shmt1P50431 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Shmt1P50431 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.72■□□□□ 0.43
Shmt1P50431 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.72■□□□□ 0.43
Shmt1P50431 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Shmt1P50431 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.72■□□□□ 0.43
Shmt1P50431 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Gm17808-201ENSMUST00000200859 894 ntBASIC17.72■□□□□ 0.43
Shmt1P50431 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.72■□□□□ 0.43
Shmt1P50431 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Shmt1P50431 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Shmt1P50431 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
Shmt1P50431 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Shmt1P50431 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.71■□□□□ 0.43
Shmt1P50431 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.71■□□□□ 0.43
Shmt1P50431 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Shmt1P50431 Gm18115-201ENSMUST00000221209 621 ntBASIC17.71■□□□□ 0.43
Shmt1P50431 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Shmt1P50431 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Shmt1P50431 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.71■□□□□ 0.43
Shmt1P50431 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Shmt1P50431 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
Shmt1P50431 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.7■□□□□ 0.42
Shmt1P50431 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.7■□□□□ 0.42
Shmt1P50431 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Gm14859-201ENSMUST00000117752 357 ntBASIC17.7■□□□□ 0.42
Shmt1P50431 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.7■□□□□ 0.42
Shmt1P50431 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Shmt1P50431 Cxcl14-202ENSMUST00000224801 1467 ntBASIC17.69■□□□□ 0.42
Shmt1P50431 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Shmt1P50431 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Shmt1P50431 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Shmt1P50431 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.69■□□□□ 0.42
Shmt1P50431 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Shmt1P50431 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.69■□□□□ 0.42
Shmt1P50431 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Shmt1P50431 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
Shmt1P50431 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Shmt1P50431 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Shmt1P50431 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Shmt1P50431 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Shmt1P50431 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Shmt1P50431 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms