Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Usp4P35123 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
Usp4P35123 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Usp4P35123 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp4P35123 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp4P35123 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.57■□□□□ 0.4
Usp4P35123 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Usp4P35123 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.57■□□□□ 0.4
Usp4P35123 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Usp4P35123 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Usp4P35123 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Usp4P35123 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Usp4P35123 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Mir1199-201ENSMUST00000117015 119 ntBASIC17.56■□□□□ 0.4
Usp4P35123 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
Usp4P35123 Mtag2-201ENSMUST00000058665 714 ntBASIC17.56■□□□□ 0.4
Usp4P35123 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Usp4P35123 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Usp4P35123 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Usp4P35123 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.55■□□□□ 0.4
Usp4P35123 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC17.55■□□□□ 0.4
Usp4P35123 Mir6349-201ENSMUST00000184059 97 ntBASIC17.55■□□□□ 0.4
Usp4P35123 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Usp4P35123 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC17.55■□□□□ 0.4
Usp4P35123 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.55■□□□□ 0.4
Usp4P35123 AC163280.1-201ENSMUST00000228194 1100 ntBASIC17.55■□□□□ 0.4
Usp4P35123 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Usp4P35123 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Usp4P35123 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Usp4P35123 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Usp4P35123 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC17.54■□□□□ 0.4
Usp4P35123 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.54■□□□□ 0.4
Usp4P35123 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Usp4P35123 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Usp4P35123 Gm37055-201ENSMUST00000191866 133 ntBASIC17.54■□□□□ 0.4
Usp4P35123 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Usp4P35123 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC17.54■□□□□ 0.4
Usp4P35123 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Usp4P35123 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Usp4P35123 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Usp4P35123 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Usp4P35123 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.53■□□□□ 0.4
Usp4P35123 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Usp4P35123 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Usp4P35123 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Usp4P35123 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms