Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.44■□□□□ 0.54
Msh3P13705 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Msh3P13705 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.44■□□□□ 0.54
Msh3P13705 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Msh3P13705 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Msh3P13705 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.43■□□□□ 0.54
Msh3P13705 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Msh3P13705 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.43■□□□□ 0.54
Msh3P13705 Gm18032-201ENSMUST00000222541 538 ntBASIC18.43■□□□□ 0.54
Msh3P13705 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Msh3P13705 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Msh3P13705 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Msh3P13705 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
Msh3P13705 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Msh3P13705 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Gm26039-201ENSMUST00000158152 144 ntBASIC18.42■□□□□ 0.54
Msh3P13705 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Msh3P13705 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Msh3P13705 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.42■□□□□ 0.54
Msh3P13705 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Msh3P13705 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.41■□□□□ 0.54
Msh3P13705 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.41■□□□□ 0.54
Msh3P13705 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.41■□□□□ 0.54
Msh3P13705 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
Msh3P13705 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
Msh3P13705 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.41■□□□□ 0.54
Msh3P13705 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC18.41■□□□□ 0.54
Msh3P13705 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Msh3P13705 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Msh3P13705 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Msh3P13705 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Gm18421-201ENSMUST00000204122 625 ntBASIC18.4■□□□□ 0.54
Msh3P13705 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.4■□□□□ 0.54
Msh3P13705 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.4■□□□□ 0.54
Msh3P13705 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Msh3P13705 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Msh3P13705 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Msh3P13705 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Msh3P13705 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Msh3P13705 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.39■□□□□ 0.53
Msh3P13705 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh3P13705 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh3P13705 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Msh3P13705 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh3P13705 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Msh3P13705 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC18.39■□□□□ 0.53
Msh3P13705 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Msh3P13705 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Msh3P13705 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.39■□□□□ 0.53
Msh3P13705 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Msh3P13705 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms