Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Gm6433-201ENSMUST00000118634 875 ntBASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Gm17661-201ENSMUST00000170317 270 ntBASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.27■□□□□ 0.52
Chmp6P0C0A3 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Chmp6P0C0A3 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.27■□□□□ 0.51
Chmp6P0C0A3 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Gm2274-201ENSMUST00000184539 609 ntBASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Gm28265-201ENSMUST00000188201 2319 ntBASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Chmp6P0C0A3 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Chmp6P0C0A3 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.24■□□□□ 0.51
Chmp6P0C0A3 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Chmp6P0C0A3 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Il3ra-202ENSMUST00000223589 738 ntBASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Chmp6P0C0A3 Haglr-201ENSMUST00000100000 2085 ntBASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Gm13836-201ENSMUST00000121159 501 ntBASIC18.22■□□□□ 0.51
Chmp6P0C0A3 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms