Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Iqck-206ENSMUST00000208658 2891 ntBASIC16.15■□□□□ 0.18
Cacna1bO55017 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Cacna1bO55017 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cacna1bO55017 Auts2-212ENSMUST00000178555 309 ntBASIC16.14■□□□□ 0.18
Cacna1bO55017 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cacna1bO55017 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Cacna1bO55017 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.14■□□□□ 0.17
Cacna1bO55017 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC16.14■□□□□ 0.17
Cacna1bO55017 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.14■□□□□ 0.17
Cacna1bO55017 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Cacna1bO55017 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Cacna1bO55017 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.14■□□□□ 0.17
Cacna1bO55017 Gm15165-201ENSMUST00000118140 502 ntBASIC16.14■□□□□ 0.17
Cacna1bO55017 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.14■□□□□ 0.17
Cacna1bO55017 Gm6296-201ENSMUST00000222599 943 ntBASIC16.14■□□□□ 0.17
Cacna1bO55017 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC16.14■□□□□ 0.17
Cacna1bO55017 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Cacna1bO55017 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 AC131586.3-201ENSMUST00000228355 1367 ntBASIC16.13■□□□□ 0.17
Cacna1bO55017 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Gm11779-201ENSMUST00000118541 368 ntBASIC16.13■□□□□ 0.17
Cacna1bO55017 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC16.13■□□□□ 0.17
Cacna1bO55017 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
Cacna1bO55017 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Cacna1bO55017 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC16.12■□□□□ 0.17
Cacna1bO55017 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC16.12■□□□□ 0.17
Cacna1bO55017 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.12■□□□□ 0.17
Cacna1bO55017 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Cacna1bO55017 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Cacna1bO55017 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Cacna1bO55017 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm13036-201ENSMUST00000117799 748 ntBASIC16.11■□□□□ 0.17
Cacna1bO55017 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm2213-201ENSMUST00000197485 688 ntBASIC16.11■□□□□ 0.17
Cacna1bO55017 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC16.11■□□□□ 0.17
Cacna1bO55017 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Cacna1bO55017 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Cacna1bO55017 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.11■□□□□ 0.17
Cacna1bO55017 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Cacna1bO55017 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.11■□□□□ 0.17
Cacna1bO55017 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Cacna1bO55017 Gm45141-201ENSMUST00000206502 1888 ntBASIC16.11■□□□□ 0.17
Cacna1bO55017 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Cacna1bO55017 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms