Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Hmgb3O54879 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Hmgb3O54879 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Hmgb3O54879 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC13.96□□□□□ -0.17
Hmgb3O54879 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Hmgb3O54879 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC13.96□□□□□ -0.17
Hmgb3O54879 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC13.96□□□□□ -0.17
Hmgb3O54879 Gm6420-201ENSMUST00000193885 723 ntBASIC13.96□□□□□ -0.17
Hmgb3O54879 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC13.96□□□□□ -0.17
Hmgb3O54879 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Hmgb3O54879 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Hmgb3O54879 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Hmgb3O54879 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Hmgb3O54879 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Hmgb3O54879 Gm42918-201ENSMUST00000199249 1580 ntBASIC13.96□□□□□ -0.18
Hmgb3O54879 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Hmgb3O54879 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.18
Hmgb3O54879 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Hmgb3O54879 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Hmgb3O54879 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Hmgb3O54879 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Hmgb3O54879 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Gm13216-201ENSMUST00000117145 591 ntBASIC13.95□□□□□ -0.18
Hmgb3O54879 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Hmgb3O54879 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Hmgb3O54879 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
Hmgb3O54879 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Hmgb3O54879 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Gm37820-201ENSMUST00000194021 2147 ntBASIC13.94□□□□□ -0.18
Hmgb3O54879 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Hmgb3O54879 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Gm13234-201ENSMUST00000120010 747 ntBASIC13.94□□□□□ -0.18
Hmgb3O54879 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC13.94□□□□□ -0.18
Hmgb3O54879 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC13.94□□□□□ -0.18
Hmgb3O54879 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
Hmgb3O54879 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Hmgb3O54879 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms