Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Gm16499-203ENSMUST00000204633 2177 ntBASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim55G3X8Y1 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim55G3X8Y1 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Mir7075-201ENSMUST00000184187 82 ntBASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Gm8495-201ENSMUST00000188740 694 ntBASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Flvcr1-202ENSMUST00000191946 1216 ntBASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim55G3X8Y1 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim55G3X8Y1 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim55G3X8Y1 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim55G3X8Y1 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim55G3X8Y1 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim55G3X8Y1 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim55G3X8Y1 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Gm18284-201ENSMUST00000172604 624 ntBASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim55G3X8Y1 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms