Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC091917.2-201ENST00000505002 744 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 RPS4XP20-201ENST00000505751 772 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC097486.1-201ENST00000515331 210 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 RN7SKP147-201ENST00000517154 244 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 SEC11B-201ENST00000518383 499 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC008147.3-201ENST00000548666 354 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 NMNAT1P5-201ENST00000559657 841 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AF230666.2-201ENST00000602328 725 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC095055.1-201ENST00000603472 1113 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 RMST_5.1-201ENST00000618704 126 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 MIR6810-201ENST00000622701 70 ntBASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
HDDC3Q8N4P3 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 PANDAR-201ENST00000629595 1506 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 SNORD56.6-201ENST00000384569 71 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 MTCYBP7-201ENST00000419540 1134 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 RPL31P20-201ENST00000449593 360 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AC002553.2-201ENST00000453217 340 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AL356390.1-201ENST00000455684 397 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 PSAT1P4-201ENST00000466500 526 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 YWHABP2-201ENST00000540201 713 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 EIF3FP1-201ENST00000613970 806 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 AC012618.3-205ENST00000637896 1496 ntBASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.38□□□□□ -1.55
HDDC3Q8N4P3 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC006484.1-201ENST00000435086 1884 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 RNU4-7P-201ENST00000364758 141 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 FABP12P1-201ENST00000401911 322 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 NPM1P37-201ENST00000403105 874 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 RPL10P10-201ENST00000403509 664 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 RN7SKP126-201ENST00000411143 300 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 RPL26P29-201ENST00000415623 438 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC245028.1-201ENST00000423259 256 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC104837.2-201ENST00000427236 424 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 EIF2S2P3-201ENST00000428356 999 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC022022.1-201ENST00000430304 178 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 LINC02210-201ENST00000444561 288 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC069277.2-201ENST00000454211 432 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 RPS3AP41-201ENST00000462701 778 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 RNA5SP373-201ENST00000517271 95 ntBASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.37□□□□□ -1.55
HDDC3Q8N4P3 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms