Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AP002373.2-201ENST00000541631 1060 ntBASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 OR11J2P-201ENST00000555298 907 ntBASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 MIR4480-201ENST00000582492 71 ntBASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AC002069.2-201ENST00000603580 883 ntBASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AL353662.3-201ENST00000625131 237 ntBASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
PCDHGA1Q9Y5H4 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 OR55B1P-203ENST00000641518 2602 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC092451.3-201ENST00000625067 1343 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RNU4-4P-201ENST00000364588 130 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 NPM1P10-201ENST00000398310 865 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AL512504.1-201ENST00000415494 778 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AL354868.1-201ENST00000417077 482 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RPL12P17-201ENST00000432393 498 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC092647.3-201ENST00000443044 633 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AL591623.2-201ENST00000449978 222 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC022431.1-201ENST00000450941 438 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 CALM1P2-201ENST00000452941 448 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 EIF2S2P4-201ENST00000461070 984 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC015864.1-201ENST00000496512 544 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RNU6-362P-201ENST00000516736 90 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 BRD9P1-201ENST00000529855 560 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC106730.2-201ENST00000566641 540 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 RBM22P1-201ENST00000578589 1214 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 MIR3934-201ENST00000579806 107 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC026367.3-201ENST00000619032 590 ntBASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
PCDHGA1Q9Y5H4 AC239868.2-201ENST00000564237 4527 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AL133388.1-201ENST00000404509 287 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 FAR2P2-201ENST00000413041 594 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AL807761.1-201ENST00000417622 171 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AC009506.2-201ENST00000420635 840 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 FAR2P4-202ENST00000425399 584 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 CRIP1P1-201ENST00000427567 185 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AL049745.1-201ENST00000433953 286 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 Z80107.2-201ENST00000445127 392 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 GAPDHP25-201ENST00000447061 1001 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 AC021205.1-201ENST00000468797 348 ntBASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC5.27□□□□□ -1.57
PCDHGA1Q9Y5H4 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms