Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AL136231.1-201ENST00000429407 730 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 IGHV5-78-201ENST00000450948 295 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 RPL32P9-201ENST00000487963 407 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 RPL37AP8-201ENST00000494116 276 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 COX6B1P5-201ENST00000509843 249 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 RNA5SP43-201ENST00000516559 110 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AC019322.1-201ENST00000571869 389 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 GMCL1P2-201ENST00000605230 823 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 GVINP1-202ENST00000531871 7271 ntBASIC5.14□□□□□ -1.59
LHX3Q9UBR4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
LHX3Q9UBR4 AL442128.2-201ENST00000620246 1824 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 MAPK10-338ENST00000641647 3362 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RNA5SP428-201ENST00000365129 132 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 SNORA66-201ENST00000384792 133 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AL078599.1-201ENST00000402075 293 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RCC2P2-201ENST00000422174 918 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 BRWD1P3-201ENST00000428816 390 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RBMY2QP-201ENST00000429799 1147 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 LYPLA1P1-201ENST00000434514 622 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 CEACAMP7-201ENST00000444105 496 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AL354714.3-201ENST00000447284 493 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC239798.3-201ENST00000454459 408 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC091180.1-201ENST00000462104 372 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RN7SL329P-201ENST00000467740 299 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 CR383656.1-201ENST00000484916 377 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 NIFKP7-201ENST00000503365 834 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC100784.1-201ENST00000522790 310 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC007448.1-201ENST00000582714 234 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 MEMO1P5-201ENST00000604810 406 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC067838.1-201ENST00000606064 577 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC037198.3-201ENST00000616754 526 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 CDC27P2-201ENST00000425026 1922 ntBASIC5.13□□□□□ -1.59
LHX3Q9UBR4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
LHX3Q9UBR4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
LHX3Q9UBR4 AC083837.1-201ENST00000565297 2994 ntBASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms