Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.89□□□□□ -1.63
HOXD4P09016 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HOXD4P09016 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.89□□□□□ -1.63
HOXD4P09016 AC000374.1-201ENST00000434698 1745 ntBASIC4.89□□□□□ -1.63
HOXD4P09016 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXD4P09016 AC023421.1-201ENST00000590535 1785 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXD4P09016 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 AL022322.2-201ENST00000624072 20397 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
HOXD4P09016 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 RNA5SP305-201ENST00000362665 119 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC083799.1-201ENST00000366451 910 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 AL589647.1-201ENST00000402485 466 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXD4P09016 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXD4P09016 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXD4P09016 IGBP1P3-201ENST00000447449 1000 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC017099.1-201ENST00000448261 1028 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 RPL12P39-201ENST00000455456 496 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 RNA5SP103-201ENST00000459503 118 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXD4P09016 RFPL4AP5-201ENST00000514977 504 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 RN7SKP66-201ENST00000516681 231 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXD4P09016 AP000676.2-201ENST00000529711 301 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXD4P09016 AC009303.3-201ENST00000591103 736 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AP002884.5-201ENST00000595053 1132 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXD4P09016 AC005520.3-201ENST00000602874 370 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC104785.1-201ENST00000603220 588 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC138473.1-201ENST00000605717 526 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC009163.6-201ENST00000612367 342 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.88□□□□□ -1.63
HOXD4P09016 AC103798.2-201ENST00000624292 632 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXD4P09016 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXD4P09016 TMEM30CP-203ENST00000637814 1035 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.88□□□□□ -1.63
HOXD4P09016 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 AC112255.1-201ENST00000624070 2493 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 BTBD10P1-201ENST00000549824 1352 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXD4P09016 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXD4P09016 CUL4AP1-201ENST00000514750 1863 ntBASIC4.88□□□□□ -1.63
HOXD4P09016 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXD4P09016 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXD4P09016 AC011447.7-201ENST00000624228 1590 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.87□□□□□ -1.63
HOXD4P09016 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXD4P09016 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXD4P09016 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXD4P09016 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXD4P09016 AL139128.1-201ENST00000413921 941 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC019070.1-201ENST00000415008 1024 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 TRGV7-201ENST00000427089 353 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 RSL24D1P8-201ENST00000434442 492 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 NDUFA5P8-201ENST00000449019 346 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
HOXD4P09016 RPS18P6-201ENST00000476880 458 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 TRBV8-1-201ENST00000481590 279 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 SUMO2P4-201ENST00000504193 276 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 RPEP1-201ENST00000504507 658 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXD4P09016 AC108043.1-201ENST00000512696 574 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXD4P09016 SEPT10P1-201ENST00000517342 1162 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 AP003168.1-201ENST00000530091 307 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 OR5AM1P-201ENST00000532136 1032 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 AC025423.2-201ENST00000537570 439 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HOXD4P09016 MIR3691-201ENST00000578066 90 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 AP000919.1-201ENST00000582850 985 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.87□□□□□ -1.63
HOXD4P09016 AC012467.1-201ENST00000607740 256 ntBASIC4.87□□□□□ -1.63
HOXD4P09016 AL354696.1-201ENST00000614652 497 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms