Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.4□□□□□ -1.55
COL4A4P53420 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A4P53420 AC139713.2-214ENST00000642059 1811 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A4P53420 RPL7P58-201ENST00000402913 758 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AL049697.2-201ENST00000403708 294 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 U3.32-201ENST00000408116 212 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.4□□□□□ -1.55
COL4A4P53420 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.4□□□□□ -1.55
COL4A4P53420 AL136231.1-201ENST00000429407 730 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.4□□□□□ -1.55
COL4A4P53420 NPM1P33-201ENST00000438918 872 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 PPIAP21-201ENST00000464473 501 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AC109327.1-201ENST00000471666 403 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AC011005.3-201ENST00000491624 395 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 RN7SL441P-201ENST00000492388 296 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.4□□□□□ -1.55
COL4A4P53420 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC5.4□□□□□ -1.55
COL4A4P53420 AC012339.2-201ENST00000523996 453 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC5.4□□□□□ -1.55
COL4A4P53420 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.4□□□□□ -1.55
COL4A4P53420 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.4□□□□□ -1.55
COL4A4P53420 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.4□□□□□ -1.55
COL4A4P53420 EIF1P5-201ENST00000585002 234 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 BNIP3P35-201ENST00000604530 490 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 AC092653.1-201ENST00000608509 531 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.4□□□□□ -1.55
COL4A4P53420 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A4P53420 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.55
COL4A4P53420 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.4□□□□□ -1.55
COL4A4P53420 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A4P53420 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A4P53420 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.4□□□□□ -1.55
COL4A4P53420 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC5.39□□□□□ -1.55
COL4A4P53420 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
COL4A4P53420 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.39□□□□□ -1.55
COL4A4P53420 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
COL4A4P53420 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC5.39□□□□□ -1.55
COL4A4P53420 RN7SKP153-201ENST00000365026 316 ntBASIC5.39□□□□□ -1.55
COL4A4P53420 FABP7P1-201ENST00000424004 391 ntBASIC5.39□□□□□ -1.55
COL4A4P53420 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC5.39□□□□□ -1.55
COL4A4P53420 SLC25A18P1-201ENST00000449385 454 ntBASIC5.39□□□□□ -1.55
COL4A4P53420 AC128716.1-201ENST00000475129 166 ntBASIC5.39□□□□□ -1.55
COL4A4P53420 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.39□□□□□ -1.55
COL4A4P53420 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.39□□□□□ -1.55
COL4A4P53420 KLRK1-204ENST00000540818 951 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.39□□□□□ -1.55
COL4A4P53420 AC022884.2-201ENST00000578535 580 ntBASIC5.39□□□□□ -1.55
COL4A4P53420 AL590392.1-201ENST00000604960 446 ntBASIC5.39□□□□□ -1.55
COL4A4P53420 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.39□□□□□ -1.55
COL4A4P53420 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL4A4P53420 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.39□□□□□ -1.55
COL4A4P53420 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC5.39□□□□□ -1.55
COL4A4P53420 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.38□□□□□ -1.55
COL4A4P53420 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.38□□□□□ -1.55
COL4A4P53420 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
COL4A4P53420 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
COL4A4P53420 RNA5SP515-201ENST00000364570 118 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.38□□□□□ -1.55
COL4A4P53420 AC079809.1-201ENST00000415468 276 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.38□□□□□ -1.55
COL4A4P53420 BX510359.2-201ENST00000417920 305 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 AURKAPS2-201ENST00000454983 333 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.38□□□□□ -1.55
COL4A4P53420 AL356390.1-201ENST00000455684 397 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 snoU13.1-201ENST00000459157 104 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 RPL7P40-201ENST00000481703 745 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 NIP7P2-201ENST00000485801 544 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.38□□□□□ -1.55
COL4A4P53420 AC020910.3-201ENST00000603701 874 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 AC067959.1-201ENST00000604334 379 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 AC108359.1-201ENST00000616451 1211 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 AC019206.1-201ENST00000621938 425 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.38□□□□□ -1.55
COL4A4P53420 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.38□□□□□ -1.55
COL4A4P53420 AC140134.1-201ENST00000511830 3544 ntBASIC5.38□□□□□ -1.55
COL4A4P53420 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL4A4P53420 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL4A4P53420 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC5.37□□□□□ -1.55
COL4A4P53420 MIR134-201ENST00000385258 73 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms