Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 HSPD1P7-201ENST00000447985 1686 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 RNA5SP487-201ENST00000410186 122 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 RN7SKP125-201ENST00000410481 302 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 RAB9AP4-201ENST00000415230 609 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 MTND2P40-201ENST00000436718 841 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 MTND4P15-201ENST00000437913 1033 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 MED28P3-201ENST00000444288 531 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 OTX2P1-201ENST00000450956 354 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL645937.3-201ENST00000453647 936 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 RPS23P1-201ENST00000491662 432 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 NPM1P21-201ENST00000513394 762 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 OR5AM1P-201ENST00000532136 1032 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 RPL10P14-201ENST00000565265 298 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC005341.1-201ENST00000571086 708 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC027281.1-201ENST00000574178 758 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 MIR4433B-201ENST00000581329 102 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC087763.1-201ENST00000603391 286 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC007423.1-201ENST00000605009 627 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL022394.1-201ENST00000606979 292 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC009163.6-201ENST00000612367 342 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC026367.3-201ENST00000619032 590 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC011933.2-201ENST00000578539 2790 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 AC012078.1-201ENST00000405035 1646 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
USP41Q3LFD5 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 MTND4P21-201ENST00000453886 1357 ntBASIC5.8□□□□□ -1.48
USP41Q3LFD5 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
USP41Q3LFD5 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 CR382285.2-201ENST00000624662 1495 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AL353625.1-202ENST00000366273 571 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 DUTP5-201ENST00000406790 469 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 FAR1P1-201ENST00000427163 934 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AL136231.1-201ENST00000429407 730 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 GAPDHP25-201ENST00000447061 1001 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 CBX1P5-201ENST00000475330 559 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 RPL7P6-201ENST00000480903 738 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 SEC11B-201ENST00000518383 499 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC084036.1-201ENST00000609190 508 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC092574.1-201ENST00000609771 420 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AL133445.2-201ENST00000611191 527 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC090510.2-201ENST00000617465 629 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 CYP4F35P-202ENST00000636121 390 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 OR55B1P-203ENST00000641518 2602 ntBASIC5.79□□□□□ -1.48
USP41Q3LFD5 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
USP41Q3LFD5 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
USP41Q3LFD5 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms