Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
Prpf40aQ9R1C7 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Gm20472-201ENSMUST00000174403 1240 ntBASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Prpf40aQ9R1C7 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
Prpf40aQ9R1C7 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Gm7791-201ENSMUST00000219066 539 ntBASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Prpf40aQ9R1C7 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Prpf40aQ9R1C7 Haglr-201ENSMUST00000100000 2085 ntBASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Prpf40aQ9R1C7 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Prpf40aQ9R1C7 Gm44487-201ENSMUST00000205145 325 ntBASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms