Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Mir7071-201ENSMUST00000184847 69 ntBASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Gm45203-201ENSMUST00000206384 1831 ntBASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Brf1Q8CFK2 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Brf1Q8CFK2 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Actl10-202ENSMUST00000226583 1501 ntBASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Brf1Q8CFK2 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 AC107711.5-202ENSMUST00000226429 702 ntBASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Shroom3-211ENSMUST00000225438 5742 ntBASIC20.28■□□□□ 0.84
Brf1Q8CFK2 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Brf1Q8CFK2 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Gm36858-201ENSMUST00000194501 2391 ntBASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Brf1Q8CFK2 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Brf1Q8CFK2 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Phf7-203ENSMUST00000226565 1971 ntBASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Brf1Q8CFK2 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC20.25■□□□□ 0.83
Brf1Q8CFK2 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms