Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Vps53Q8CCB4 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps53Q8CCB4 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps53Q8CCB4 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Vps53Q8CCB4 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Vps53Q8CCB4 Gm18101-201ENSMUST00000215769 548 ntBASIC19.57■□□□□ 0.72
Vps53Q8CCB4 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps53Q8CCB4 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Vps53Q8CCB4 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.56■□□□□ 0.72
Vps53Q8CCB4 AC134329.2-201ENSMUST00000217897 428 ntBASIC19.56■□□□□ 0.72
Vps53Q8CCB4 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Gm19721-201ENSMUST00000195284 1764 ntBASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps53Q8CCB4 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps53Q8CCB4 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Gm14859-201ENSMUST00000117752 357 ntBASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Gm22697-201ENSMUST00000175194 63 ntBASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.54■□□□□ 0.72
Vps53Q8CCB4 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps53Q8CCB4 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Vps53Q8CCB4 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms