Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Gm7370-201ENSMUST00000219471 767 ntBASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trub1Q8C0D0 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trub1Q8C0D0 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trub1Q8C0D0 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trub1Q8C0D0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trub1Q8C0D0 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Gm13559-201ENSMUST00000120476 863 ntBASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Gm2274-201ENSMUST00000184539 609 ntBASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trub1Q8C0D0 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.3■□□□□ 0.36
Trub1Q8C0D0 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms