Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm13312-201ENSMUST00000119631 718 ntBASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Usp40Q8BWR4 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Gm5864-201ENSMUST00000202263 970 ntBASIC23.02■■□□□ 1.28
Usp40Q8BWR4 AC164629.2-201ENSMUST00000217916 270 ntBASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Mzt1-203ENSMUST00000227948 952 ntBASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
Usp40Q8BWR4 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Usp40Q8BWR4 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Gm10052-201ENSMUST00000168019 960 ntBASIC23■■□□□ 1.27
Usp40Q8BWR4 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
Usp40Q8BWR4 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Gm7729-201ENSMUST00000050143 801 ntBASIC23■■□□□ 1.27
Usp40Q8BWR4 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC23■■□□□ 1.27
Usp40Q8BWR4 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Usp40Q8BWR4 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Usp40Q8BWR4 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
Usp40Q8BWR4 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Usp40Q8BWR4 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC23■■□□□ 1.27
Usp40Q8BWR4 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Gm15442-201ENSMUST00000117905 1527 ntBASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Gm28659-201ENSMUST00000188013 759 ntBASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Gm44430-201ENSMUST00000203376 995 ntBASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Gm44771-201ENSMUST00000206975 626 ntBASIC22.99■■□□□ 1.27
Usp40Q8BWR4 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Usp40Q8BWR4 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Gm7935-201ENSMUST00000100555 1278 ntBASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Usp40Q8BWR4 Rarb-207ENSMUST00000225921 2756 ntBASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
Usp40Q8BWR4 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms