Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm27742-201ENSMUST00000184667 60 ntBASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Ubfd1Q78JW9 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Gm17807-201ENSMUST00000186869 298 ntBASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Gm44450-201ENSMUST00000199528 114 ntBASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ubfd1Q78JW9 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Gm9954-202ENSMUST00000198686 4725 ntBASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Gm29707-201ENSMUST00000196325 491 ntBASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ubfd1Q78JW9 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ubfd1Q78JW9 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Otx2os1-206ENSMUST00000228153 787 ntBASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ubfd1Q78JW9 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Ubfd1Q78JW9 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ubfd1Q78JW9 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Ubfd1Q78JW9 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ubfd1Q78JW9 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.33■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms