Protein–RNA interactions for Protein: Q6NZM9

Hdac4, Histone deacetylase 4, mousemouse

Predictions only

Length 1,076 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hdac4Q6NZM9 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Hdac4Q6NZM9 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.8■□□□□ 0.6
Hdac4Q6NZM9 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Gm13559-201ENSMUST00000120476 863 ntBASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Hdac4Q6NZM9 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Gm13186-201ENSMUST00000118031 316 ntBASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Gm16061-201ENSMUST00000122167 857 ntBASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Gm2274-201ENSMUST00000184539 609 ntBASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Hdac4Q6NZM9 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Hdac4Q6NZM9 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Hdac4Q6NZM9 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Hdac4Q6NZM9 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms