Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC17.07■□□□□ 0.32
Sh3rf1Q69ZI1 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Gm30025-201ENSMUST00000218555 728 ntBASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Sh3rf1Q69ZI1 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Gm12382-201ENSMUST00000122005 922 ntBASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Gm37292-201ENSMUST00000192062 758 ntBASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Sh3rf1Q69ZI1 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Gm10231-201ENSMUST00000181584 441 ntBASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Gm10175-202ENSMUST00000208752 441 ntBASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Sh3rf1Q69ZI1 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Sh3rf1Q69ZI1 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Sh3rf1Q69ZI1 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms